Package: ALLSPICER 0.1.9
ALLSPICER: ALLelic Spectrum of Pleiotropy Informed Correlated Effects
Provides statistical tools to analyze heterogeneous effects of rare variants within genes that are associated with multiple traits. The package implements methods for assessing pleiotropic effects and identifying allelic heterogeneity, which can be useful in large-scale genetic studies. Methods include likelihood-based statistical tests to assess these effects. For more details, see Lu et al. (2024) <doi:10.1101/2024.10.01.614806>.
Authors:
ALLSPICER_0.1.9.tar.gz
ALLSPICER_0.1.9.zip(r-4.5)ALLSPICER_0.1.9.zip(r-4.4)ALLSPICER_0.1.9.zip(r-4.3)
ALLSPICER_0.1.9.tgz(r-4.4-any)ALLSPICER_0.1.9.tgz(r-4.3-any)
ALLSPICER_0.1.9.tar.gz(r-4.5-noble)ALLSPICER_0.1.9.tar.gz(r-4.4-noble)
ALLSPICER_0.1.9.tgz(r-4.4-emscripten)ALLSPICER_0.1.9.tgz(r-4.3-emscripten)
ALLSPICER.pdf |ALLSPICER.html✨
ALLSPICER/json (API)
| # Install 'ALLSPICER' in R: |
| install.packages('ALLSPICER', repos = c('https://wlu04.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 1 months agofrom:015023f015. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 17 2024 |
| R-4.5-win | OK | Nov 17 2024 |
| R-4.5-linux | OK | Nov 17 2024 |
| R-4.4-win | OK | Nov 17 2024 |
| R-4.4-mac | OK | Nov 17 2024 |
| R-4.3-win | OK | Nov 17 2024 |
| R-4.3-mac | OK | Nov 17 2024 |
Exports:ALLSPICEALLSPICE_simulationformat_ALLSPICE_dataget_ac_matget_af_matget_beta_hatget_c_hatget_geno_matget_likelihood_test_statsget_mle_betaget_pheno_pairget_single_genoget_true_beta
Dependencies:bitbit64clicliprcpp11crayondplyrfansigenericsgluehmslifecyclemagrittrmvtnormpillarpkgconfigprettyunitsprogressR6readrrlangtibbletidyselecttzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| ALLSPICE | ALLSPICE |
| ALLSPICE_simulation | ALLSPICE_simulation |
| format_ALLSPICE_data | format_ALLSPICE_data |
| get_ac_mat | get_ac_mat |
| get_af_mat | get_af_mat |
| get_beta_hat | get_beta_hat |
| get_c_hat | get_c_hat |
| get_geno_mat | get_geno_mat |
| get_likelihood_test_stats | get_likelihood_test_stats |
| get_mle_beta | get_mle_beta |
| get_pheno_pair | get_pheno_pair |
| get_single_geno | get_single_geno |
| get_true_beta | get_true_beta |
